5EBE		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	C5P, GOL, MLI, NAG, RP5, SCN, ZN	enzyme
Gene Ontology	Chain Function Process Component B, C, A
Primary reference	The structure and catalytic mechanism of Human Sphingomyelin Phosphodiesterase like 3a - an acid sphingomyelinase homolog with a novel nucleotide hydrolase activity., Lim SM, Yeung K, Tresaugues L, Ling TH, Nordlund P, FEBS J. 2016 Jan 18. doi: 10.1111/febs.13655. PMID:26783088

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk] Biological Unit Coordinates (5ebe.pdb1.gz) 71 Kb Biological Unit Coordinates (5ebe.pdb2.gz) 73 Kb Biological Unit Coordinates (5ebe.pdb3.gz) 72 Kb LPC: Ligand-Protein Contacts for 5EBE CSU: Contacts of Structural Units for 5EBE Structure Factors (2337 Kb) Retrieve 5EBE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EBE from S2C, [Save to disk] Re-refined 5ebe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EBE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ebe] [5ebe_A] [5ebe_B] [5ebe_C] SWISS-PROT database:

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