5EC3 Oxidoreductase date Oct 20, 2015
title Structural Insight Into The Catalyitc Mechanism Of Human 4- Hydroxyphenylpyruvate Dioxygenase
authors W.C.Yang, G.F.Yang
compound source
Molecule: 4-Hydroxyphenylpyruvate Dioxygenase
Chain: A
Synonym: 4-Hydroxyphenylpyruvic Acid Oxidase,Hppdase
Ec: 1.13.11.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hpd, Ppd
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag
symmetry Space Group: P 31 2 1
R_factor 0.154 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.540 98.540 87.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CO enzyme Oxidoreductase E.C.1.13.11.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5ec3.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5EC3
  • CSU: Contacts of Structural Units for 5EC3
  • Structure Factors (540 Kb)
  • Retrieve 5EC3 in mmCIF format [Save to disk]
  • Re-refined 5ec3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EC3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ec3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ec3] [5ec3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EC3
  • Community annotation for 5EC3 at PDBWiki (http://pdbwiki.org)

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