5ECD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EPE	enzyme
Gene Ontology	Chain Function Process Component B, A nuclease activity endonuclease activity ribonuclease activity
Primary reference	Structural analysis on the active site architecture of the VapC toxin from Shigella flexneri., Xu K, Dedic E, Brodersen DE, Proteins. 2016 Feb 2. doi: 10.1002/prot.25002. PMID:26833558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (5ecd.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 5ECD CSU: Contacts of Structural Units for 5ECD Structure Factors (488 Kb) Retrieve 5ECD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ECD from S2C, [Save to disk] Re-refined 5ecd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ECD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ecd] [5ecd_A] [5ecd_B] SWISS-PROT database:

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