OCA Atlas for 5ED0

5ED0

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
L, H, A, B, C, K, J, F, E, D, G, I	nuclease activity endonuclease activity ribonuclease activity

Primary reference

Structural analysis on the active site architecture of the VapC toxin from Shigella flexneri., Xu K, Dedic E, Brodersen DE, Proteins. 2016 Feb 2. doi: 10.1002/prot.25002. PMID:26833558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (539 Kb) [Save to disk]

Biological Unit Coordinates (5ed0.pdb1.gz) 92 Kb

Biological Unit Coordinates (5ed0.pdb2.gz) 91 Kb

Biological Unit Coordinates (5ed0.pdb3.gz) 90 Kb

Biological Unit Coordinates (5ed0.pdb4.gz) 93 Kb

Biological Unit Coordinates (5ed0.pdb5.gz) 93 Kb

Biological Unit Coordinates (5ed0.pdb6.gz) 91 Kb

Biological Unit Coordinates (5ed0.pdb7.gz) 92 Kb

CSU: Contacts of Structural Units for 5ED0

Structure Factors (2122 Kb)

Retrieve 5ED0 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5ED0 from S2C, [Save to disk]

Re-refined 5ed0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ED0 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ed0] [5ed0_A] [5ed0_B] [5ed0_C] [5ed0_D] [5ed0_E] [5ed0_F] [5ed0_G] [5ed0_H] [5ed0_I] [5ed0_J] [5ed0_K] [5ed0_L]

SWISS-PROT database:

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