OCA Atlas for 5ED4

5ED4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, CAC, EDO

enzyme

Gene

ABI38 ; AC434 ; BN1303 ; ERS024750 ; ERS024751 ; ERS024758 ; ERS124824 ; ERS124825 ; ERS124827 ; ERS124828 ; ERS124829 ; ERS124830 ; ERS124831 ; ERS124832 ; IQ38 ; IQ42 ; IQ45 ; IQ47 ; IQ48 ; IU13 ; IU15 ; IU16 ; IU17 ; IU21 ; T209

Gene
Ontology

Chain	Function	Process	Component
B, E, F, A

Primary reference

Structural basis of DNA sequence recognition by the response regulator PhoP in Mycobacterium tuberculosis., He X, Wang L, Wang S, Sci Rep. 2016 Apr 15;6:24442. doi: 10.1038/srep24442. PMID:27079268

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]

Biological Unit Coordinates (5ed4.pdb1.gz) 193 Kb

Biological Unit Coordinates (5ed4.pdb2.gz) 194 Kb

LPC: Ligand-Protein Contacts for 5ED4

CSU: Contacts of Structural Units for 5ED4

Structure Factors (913 Kb)

Retrieve 5ED4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5ED4 from S2C, [Save to disk]

Re-refined 5ed4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ED4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ed4] [5ed4_A] [5ed4_B] [5ed4_C] [5ed4_D] [5ed4_E] [5ed4_F] [5ed4_G] [5ed4_H]

SWISS-PROT database:

Domains found in 5ED4: [REC] [Trans_reg_C ] by SMART

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