5EDP	Transferase Transferase Inhibitor	date	Oct 21, 2015
title	Egfr Kinase (T790ml858r) Apo
authors	C.Eigenbrot, C.Yu
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr, Erbb, Erbb1, Her1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: I 2 3	R_factor 0.200 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.847 148.847 148.847 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand		enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	4-Aminoindazolyl-dihydrofuro[3,4-d]pyrimidines as non-covalent inhibitors of mutant epidermal growth factor receptor tyrosine kinase., Hanan EJ, Baumgardner M, Bryan MC, Chen Y, Eigenbrot C, Fan P, Gu XH, La H, Malek S, Purkey HE, Schaefer G, Schmidt S, Sideris S, Yen I, Yu C, Heffron TP, Bioorg Med Chem Lett. 2015 Nov 22. pii: S0960-894X(15)30286-9. doi:, 10.1016/j.bmcl.2015.11.078. PMID:26639762

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (5edp.pdb1.gz) 102 Kb CSU: Contacts of Structural Units for 5EDP Structure Factors (334 Kb) Retrieve 5EDP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EDP from S2C, [Save to disk] Re-refined 5edp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EDP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EDP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5edp_A] [5edp] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EDP: [TyrKc ] by SMART

Other resources with information on 5EDP

Community annotation for 5EDP at PDBWiki (http://pdbwiki.org)

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