5EE5 Transcription date Oct 22, 2015
title Structure Of Human Arl1 In Complex With The Dcb Domain Of Bi
authors A.Galindo, N.Soler, S.Munro
compound source
Molecule: Brefeldin A-Inhibited Guanine Nucleotide-Exchange 1;
Chain: A
Synonym: Brefeldin A-Inhibited Gep 1,Adp-Ribosylation Facto Nucleotide-Exchange Factor 1,P200 Arf Guanine Nucleotide Ex Factor,P200 Arf-Gep1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arfgef1, Arfgep1, Big1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Adp-Ribosylation Factor-Like Protein 1
Chain: B
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: I 1 2 1
R_factor 0.217 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.166 50.727 103.837 90.00 111.98 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand ACT, ALY, CL, GOL, GTP, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5ee5.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5EE5
  • CSU: Contacts of Structural Units for 5EE5
  • Structure Factors (943 Kb)
  • Retrieve 5EE5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EE5 from S2C, [Save to disk]
  • Re-refined 5ee5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EE5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EE5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ee5_B] [5ee5_A] [5ee5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EE5: [ARF ] by SMART
  • Other resources with information on 5EE5
  • Community annotation for 5EE5 at PDBWiki (http://pdbwiki.org)

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