5EFM Apoptosis date Oct 23, 2015
title Beclin 1 Flexible-Helical Domian (Fhd) (141-171)
authors S.Sinha, Y.Mei
compound source
Molecule: Beclin-1
Chain: A
Synonym: Coiled-Coil Myosin-Like Bcl2-Interacting Protein,P Gt197;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 3 2
R_factor 0.212 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.163 63.163 63.163 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational Flexibility Enables the Function of a BECN1 Region Essential for Starvation-Mediated Autophagy., Mei Y, Ramanathan A, Glover K, Stanley C, Sanishvili R, Chakravarthy S, Yang Z, Colbert CL, Sinha SC, Biochemistry. 2016 Apr 5;55(13):1945-58. doi: 10.1021/acs.biochem.5b01264. Epub, 2016 Mar 21. PMID:26937551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (5efm.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 5EFM
  • CSU: Contacts of Structural Units for 5EFM
  • Structure Factors (53 Kb)
  • Retrieve 5EFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EFM from S2C, [Save to disk]
  • Re-refined 5efm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5efm_A] [5efm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EFM
  • Community annotation for 5EFM at PDBWiki (http://pdbwiki.org)

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