5EG0 Transcription date Oct 26, 2015
title Hoxb13-Meis1 Heterodimer Bound To Dna
authors E.Morgunova, Y.Yin, A.Jolma, A.Popov, J.Taipale
compound source
Molecule: Homeobox Protein Meis2
Chain: A
Fragment: Unp Residues 284-338
Synonym: Meis1-Related Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Meis2, Mrg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a

Molecule: Dna (5'- D(Pgptptpgpapcpapgptptptptpapcpgpapgpg)-3
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Cpcptpcpgptpapapapapcptpgptpcpapapc)-3'
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Homeobox Protein Hox-B13
Chain: B
Fragment: Unp Residues 217-277
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hoxb13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a
symmetry Space Group: P 21 21 21
R_factor 0.286 R_Free 0.322
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.726 56.332 115.152 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5eg0.pdb1.gz) 103 Kb
  • CSU: Contacts of Structural Units for 5EG0
  • Structure Factors (405 Kb)
  • Retrieve 5EG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EG0 from S2C, [Save to disk]
  • Re-refined 5eg0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EG0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5eg0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eg0_E] [5eg0_D] [5eg0_A] [5eg0_B] [5eg0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EG0: [HOX ] by SMART
  • Other resources with information on 5EG0
  • Community annotation for 5EG0 at PDBWiki (http://pdbwiki.org)

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