5EG6 Transcription Dna Binding Protein Dna date Oct 26, 2015
title Csl-Rita Complex Bound To Dna
authors N.H.Tabaja, R.A.Kovall
compound source
Molecule: Dna (5'-D(Apaptpcptptptpcpcpcpapcpap 3');
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Recombining Binding Protein Suppressor Of Hairles
Chain: C
Fragment: Residues 53-474
Synonym: J Kappa-Recombination Signal-Binding Protein,Rbp-J
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rbpj, Igkjrb1, Igkrsbp, Rbpsuh
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hrita
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tptpapcptpgptpgpgpgpapapap 3');
Chain: A
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 2 21
R_factor 0.198 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.788 96.410 96.711 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand BU1, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5eg6.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5EG6
  • CSU: Contacts of Structural Units for 5EG6
  • Structure Factors (787 Kb)
  • Retrieve 5EG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EG6 from S2C, [Save to disk]
  • Re-refined 5eg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EG6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5eg6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eg6_R] [5eg6_A] [5eg6_C] [5eg6_B] [5eg6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EG6
  • Community annotation for 5EG6 at PDBWiki (http://pdbwiki.org)

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