5EGJ Hydrolase date Oct 27, 2015
title The Structural And Biochemical Characterization Of Acyl-Coa Mutant Asn28ala From Staphylococcus Aureus In Complex With
authors Y.B.Khandokar, P.S.Srivastava, J.K.Forwood
compound source
Molecule: Acyl Coa Hydrolase
Chain: A
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus (Strain Mu50 A 700699);
Organism_taxid: 158878
Strain: Mu50 Atcc 700699
Gene: Sav1878
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg21
symmetry Space Group: P 63 2 2
R_factor 0.208 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.730 127.730 55.722 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand COA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5egj.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 5EGJ
  • CSU: Contacts of Structural Units for 5EGJ
  • Structure Factors (227 Kb)
  • Retrieve 5EGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EGJ from S2C, [Save to disk]
  • Re-refined 5egj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EGJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5egj_A] [5egj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5EGJ
  • Community annotation for 5EGJ at PDBWiki (http://pdbwiki.org)

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