5EGM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5NY, NA, NHE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDevelopment of a novel tricyclic class of potent and selective FIXa inhibitors., Meng D, Andre P, Bateman TJ, Berger R, Chen YH, Desai K, Dewnani S, Ellsworth K, Feng D, Geissler WM, Guo L, Hruza A, Jian T, Li H, Metzger J, Parker DL, Reichert P, Sherer EC, Smith CJ, Sonatore LM, Tschirret-Guth R, Wu J, Xu J, Zhang T, Campeau LC, Orr R, Poirier M, McCabe-Dunn J, Araki K, Nishimura T, Sakurada I, Hirabayashi T, Wood HB, Bioorg Med Chem Lett. 2015 Nov 15;25(22):5437-43. doi:, 10.1016/j.bmcl.2015.07.078. Epub 2015 Jul 31. PMID:26318999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (5egm.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 5EGM
  • CSU: Contacts of Structural Units for 5EGM
  • Structure Factors (837 Kb)
  • Retrieve 5EGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EGM from S2C, [Save to disk]
  • Re-refined 5egm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5egm] [5egm_A] [5egm_B]
  • SWISS-PROT database:
  • Domains found in 5EGM: [EGF] [Tryp_SPc ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science