5EH4 Membrane Protein date Oct 28, 2015
title Crystal Structure Of The Glycophorin A Transmembrane Dimer I Cubic Phase
authors M.J.Call, M.E.Call, R.Trenker
compound source
Molecule: Glycophorin-A
Chain: A, B, C, D
Fragment: Unp Residues 89-117
Synonym: Mn Sialoglycoprotein,Pas-2,Sialoglycoprotein Alpha
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Erythrocyte
Gene: Gypa, Gpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Ptrple
symmetry Space Group: P 31 1 2
R_factor 0.228 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.195 43.195 129.419 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.81 Å
ligand OLB, SCH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal Structure of the Glycophorin A Transmembrane Dimer in Lipidic Cubic Phase., Trenker R, Call ME, Call MJ, J Am Chem Soc. 2015 Dec 10. PMID:26642914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (5eh4.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (5eh4.pdb2.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 5EH4
  • CSU: Contacts of Structural Units for 5EH4
  • Structure Factors (36 Kb)
  • Retrieve 5EH4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EH4 from S2C, [Save to disk]
  • Re-refined 5eh4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EH4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EH4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5eh4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eh4_C] [5eh4_D] [5eh4_A] [5eh4] [5eh4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EH4
  • Community annotation for 5EH4 at PDBWiki (http://pdbwiki.org)

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