5EHE Lyase date Oct 28, 2015
title Crystal Structure Of Human Carbonic Anhydrase Isozyme II Wit (Benzylamino)-2,5,6-Trifluoro-4-[(2-Hydroxyethyl) Sulfonyl]Benzenesulfonamide
authors A.Smirnov, E.Manakova, S.Grazulis
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Fragment: Human Carbonic Anhydrase II
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.200 41.026 71.950 90.00 104.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand DMS, MES, PEG, WWO, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntrinsic Thermodynamics and Structures of 2,4- and 3,4-Substituted Fluorinated Benzenesulfonamides Binding to Carbonic Anhydrases., Zubriene A, Smirnov A, Dudutiene V, Timm DD, Matuliene J, Michailoviene V, Zaksauskas A, Manakova E, Grazulis S, Matulis D, ChemMedChem. 2016 Dec 21. doi: 10.1002/cmdc.201600509. PMID:28001003
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5ehe.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5EHE
  • CSU: Contacts of Structural Units for 5EHE
  • Structure Factors (1321 Kb)
  • Retrieve 5EHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EHE from S2C, [Save to disk]
  • Re-refined 5ehe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EHE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ehe] [5ehe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EHE: [Carb_anhydrase ] by SMART
  • Other resources with information on 5EHE
  • Community annotation for 5EHE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science