5EI6 Transferase date Oct 29, 2015
title Rapid Discovery Of Pyrido[3,4-D]Pyrimidine Inhibitors Of Mon Spindle Kinase 1 (Mps1) Using A Structure-Based Hydridizati Approach
authors P.Innocenti, H.L.Woodward, S.Solanki, N.Naud, I.M.Westwood, N.Cro A.Hayes, J.Roberts, A.T.Henley, R.Baker, A.Faisal, G.Mak, G.Box, M A.De Haven Brandon, L.O'Fee, J.Saville, J.Schmitt, R.Burke, R.L. Montfort, F.I.Raymaud, S.A.Eccles, S.Linardopoulos, J.Blagg, S.H
compound source
Molecule: Dual Specificity Protein Kinase Ttk
Chain: A
Synonym: Phosphotyrosine Picked Threonine-Protein Kinase,Py
Ec: 2.7.12.1
Engineered: Yes
Other_details: N-(2,4-Dimethoxyphenyl)-5-(1-Methyl-1h-Pyraz Isoquinolin-3-Amine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttk, Mps1, Mps1l1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: I 2 2 2
R_factor 0.197 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.960 104.044 111.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand 5OQ, DMS enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRapid Discovery of Pyrido[3,4-d]pyrimidine Inhibitors of Monopolar Spindle Kinase 1 (MPS1) Using a Structure-Based Hybridization Approach., Innocenti P, Woodward HL, Solanki S, Naud S, Westwood IM, Cronin N, Hayes A, Roberts J, Henley AT, Baker R, Faisal A, Mak GW, Box G, Valenti M, De Haven Brandon A, O'Fee L, Saville H, Schmitt J, Matijssen B, Burke R, van Montfort RL, Raynaud FI, Eccles SA, Linardopoulos S, Blagg J, Hoelder S, J Med Chem. 2016 Apr 28;59(8):3671-88. doi: 10.1021/acs.jmedchem.5b01811. Epub, 2016 Apr 7. PMID:27055065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5ei6.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 5EI6
  • CSU: Contacts of Structural Units for 5EI6
  • Structure Factors (641 Kb)
  • Retrieve 5EI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EI6 from S2C, [Save to disk]
  • Re-refined 5ei6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EI6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ei6_A] [5ei6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EI6: [S_TKc ] by SMART
  • Other resources with information on 5EI6
  • Community annotation for 5EI6 at PDBWiki (http://pdbwiki.org)

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