5EIQ Immune System date Oct 30, 2015
title Human Oscar Ligand-Binding Domain
authors J.M.Hinerman, D.G.Conrady, A.B.Herr
compound source
Molecule: Osteoclast-Associated Immunoglobulin-Like Recepto
Chain: A
Synonym: Hoscar,Polymeric Immunoglobulin Receptor 3,Poly-Ig 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oscar
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pdest17
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.938 48.486 74.945 90.00 91.82 90.00
method X-Ray Diffractionresolution 2.01 Å
Primary referenceStructural basis for collagen recognition by the immune receptor OSCAR., Zhou L, Hinerman JM, Blaszczyk M, Miller JL, Conrady DG, Barrow AD, Chirgadze DY, Bihan D, Farndale RW, Herr AB, Blood. 2015 Nov 9. pii: blood-2015-08-667055. PMID:26552697
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5eiq.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 5EIQ
  • Structure Factors (681 Kb)
  • Retrieve 5EIQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EIQ from S2C, [Save to disk]
  • Re-refined 5eiq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EIQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EIQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eiq] [5eiq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5EIQ: [IG] [IG_like ] by SMART
  • Other resources with information on 5EIQ
  • Community annotation for 5EIQ at PDBWiki (http://pdbwiki.org)

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