5EIW	Transferase	date	Oct 30, 2015
title	Dengue 3 Ns5 Methyltransferase Bound To S-Adenosyl Methionin Fragment Nb3c2
authors	K.Barral, G.Bricogne, A.Sharff
compound		source
Molecule: Ns5 Methyltransferase Chain: A, C Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Dengue Virus Type 3 Organism_common: Denv-3 Organism_taxid: 11069 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcox20a
symmetry	Space Group: P 21 21 2	R_factor 0.181 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.260 184.370 51.980 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.61 Å
ligand	SAM, X0V	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Discovery of novel dengue virus NS5 methyltransferase non-nucleoside inhibitors by fragment-based drug design., Benmansour F, Trist I, Coutard B, Decroly E, Querat G, Brancale A, Barral K, Eur J Med Chem. 2016 Oct 5;125:865-880. doi: 10.1016/j.ejmech.2016.10.007. PMID:27750202

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk] Biological Unit Coordinates (5eiw.pdb1.gz) 90 Kb Biological Unit Coordinates (5eiw.pdb2.gz) 89 Kb LPC: Ligand-Protein Contacts for 5EIW CSU: Contacts of Structural Units for 5EIW Structure Factors (4865 Kb) Retrieve 5EIW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EIW from S2C, [Save to disk] Re-refined 5eiw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EIW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EIW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eiw_A] [5eiw] [5eiw_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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