5EKG Protein Binding date Nov 03, 2015
title Crystallization And X-Ray Diffraction Data Collection Of Imp Alpha From Mus Musculus Complexed With A Xpg Nls Peptide, F
authors A.C.Barros, A.A.S.Takeda, M.R.M.Fontes
compound source
Molecule: Xpg2 Peptide
Chain: B, C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Importin Subunit Alpha-1
Chain: A
Fragment: Unp Residues 70-529
Synonym: Importin Alpha P1,Karyopherin Subunit Alpha-2,Pend Targeting Complex 58 Kda Subunit,Ptac58,Rag Cohort Protein Alpha;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kpna2, Rch1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.492 90.842 100.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and calorimetric studies demonstrate that Xeroderma pigmentosum type G (XPG) can be imported to the nucleus by a classical nuclear import pathway via a monopartite NLS sequence., de Barros AC, Takeda AA, Dreyer TR, Velazquez-Campoy A, Kobe B, Fontes MR, J Mol Biol. 2016 Jan 23. pii: S0022-2836(16)00038-3. doi:, 10.1016/j.jmb.2016.01.019. PMID:26812207
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5ekg.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 5EKG
  • Structure Factors (312 Kb)
  • Retrieve 5EKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EKG from S2C, [Save to disk]
  • Re-refined 5ekg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EKG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ekg] [5ekg_B] [5ekg_A] [5ekg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5EKG: [ARM] [RNAse_Pc ] by SMART
  • Other resources with information on 5EKG
  • Community annotation for 5EKG at PDBWiki (http://pdbwiki.org)

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