5EKJ Lyase Lyase Inhibitor date Nov 03, 2015
title Human Carbonic Anhydrase II Complexed With A Two-Faced Guest
authors B.W.Roose, I.J.Dmochowski
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcam
symmetry Space Group: P 1 21 1
R_factor 0.134 R_Free 0.151
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.350 41.350 72.130 90.00 104.15 90.00
method X-Ray Diffractionresolution 1.13 Å
ligand GOL, NA, TG4, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProgramming A Molecular Relay for Ultrasensitive Biodetection through Xe NMR., Wang Y, Roose BW, Philbin JP, Doman JL, Dmochowski IJ, Angew Chem Int Ed Engl. 2015 Dec 21. doi: 10.1002/anie.201508990. PMID:26692420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (5ekj.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5EKJ
  • CSU: Contacts of Structural Units for 5EKJ
  • Structure Factors (1899 Kb)
  • Retrieve 5EKJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EKJ from S2C, [Save to disk]
  • Re-refined 5ekj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EKJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EKJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ekj] [5ekj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EKJ: [Carb_anhydrase ] by SMART
  • Other resources with information on 5EKJ
  • Community annotation for 5EKJ at PDBWiki (http://pdbwiki.org)

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