5ELI	Immune System	date	Nov 04, 2015
title	Triggering Receptor Expressed On Myeloid Cells 2
authors	T.J.Brett, D.L.Kober
compound		source
Molecule: Triggering Receptor Expressed On Myeloid Cells 2 Chain: A, B Synonym: Trem-2,Triggering Receptor Expressed On Monocytes Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Trem2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293f Expression_system_organ: Kidney Expression_system_tissue: Embryonic Kidney Expression_system_cell: Epithelial Expression_system_vector_type: Plasmid Expression_system_plasmid: Phlsec
symmetry	Space Group: P 64 2 2	R_factor 0.261 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.763 125.763 183.659 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	NAG	enzyme
Primary reference	Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms., Kober DL, Alexander-Brett JM, Karch CM, Cruchaga C, Colonna M, Holtzman MJ, Brett TJ, Elife. 2016 Dec 20;5. pii: e20391. doi: 10.7554/eLife.20391. PMID:27995897

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (5eli.pdb1.gz) 39 Kb Biological Unit Coordinates (5eli.pdb2.gz) 39 Kb LPC: Ligand-Protein Contacts for 5ELI CSU: Contacts of Structural Units for 5ELI Structure Factors (136 Kb) Retrieve 5ELI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ELI from S2C, [Save to disk] Re-refined 5eli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5ELI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eli_A] [5eli] [5eli_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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