5ELX	Hydrolase	date	Nov 05, 2015
title	S. Cerevisiae Dbp5 Bound To Rna And Mant-Adp Bef3
authors	M.K.Merchant, Y.Modis
compound		source
Molecule: Atp-Dependent Rna Helicase Dbp5 Chain: A Fragment: Unp Residues 91-481 Synonym: Dead Box Protein 5,Helicase Ca56,Ribonucleic Acid Trafficking Protein 8; Ec: 3.6.4.13 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Yjm78 Organism_common: Baker'S Yeast Organism_taxid: 307796 Gene: Dbp5, Rat8, Scy_5119 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'-R(Pupupupupupu)-3') Chain: B Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Yjm78 Organism_taxid: 307796 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.082 91.751 104.521 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.81 Å
ligand	BEF, M2A, MG, NO3	enzyme	Hydrolase E.C.3.6.4.13 BRENDA
Gene	SCY
Gene Ontology	Chain Function Process Component A
Primary reference	Pi Release Limits the Intrinsic and RNA-Stimulated ATPase Cycles of DEAD-Box Protein 5 (Dbp5)., Wong EV, Cao W, Voros J, Merchant M, Modis Y, Hackney DD, Montpetit B, De La Cruz EM, J Mol Biol. 2016 Jan 29;428(2 Pt B):492-508. doi: 10.1016/j.jmb.2015.12.018. Epub, 2015 Dec 28. PMID:26730886

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (5elx.pdb1.gz) 74 Kb LPC: Ligand-Protein Contacts for 5ELX CSU: Contacts of Structural Units for 5ELX Structure Factors (680 Kb) Retrieve 5ELX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ELX from S2C, [Save to disk] Re-refined 5elx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ELX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ELX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5elx] [5elx_A] [5elx_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5ELX: [DEXDc] [HELICc ] by SMART

Other resources with information on 5ELX

Community annotation for 5ELX at PDBWiki (http://pdbwiki.org)

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