5EM9	Protein Transport	date	Nov 06, 2015
title	Crystal Structure Of The Snx27 Pdz Domain Bound To The Phosp C-Terminal 5ht4(A)R Pdz Binding Motif
authors	B.M.Collins, T.Clairfeuille
compound		source
Molecule: Sorting Nexin-27 Chain: A Fragment: Pdz Domain (Unp Residues 39-133) Synonym: Map-Responsive Gene Protein,Methamphetamine-Respon Transcript 1 Protein,Pdz-Protein Mrt1; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Snx27, Mrt1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Sep-Leu-Glu-Ser-Cys-Phe Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.219 48.753 57.059 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	SEP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex., Clairfeuille T, Mas C, Chan AS, Yang Z, Tello-Lafoz M, Chandra M, Widagdo J, Kerr MC, Paul B, Merida I, Teasdale RD, Pavlos NJ, Anggono V, Collins BM, Nat Struct Mol Biol. 2016 Sep 5. doi: 10.1038/nsmb.3290. PMID:27595347

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (5em9.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 5EM9 CSU: Contacts of Structural Units for 5EM9 Structure Factors (183 Kb) Retrieve 5EM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EM9 from S2C, [Save to disk] Re-refined 5em9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EM9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EM9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5em9_B] [5em9] [5em9_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EM9: [PDZ ] by SMART

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