5EMC Transcription Dna date Nov 06, 2015
title Transcription Factor Grdbd And Smgre Complex
authors X.D.Su, T.Lian, J.Jin
compound source
Molecule: Dna (5'-D(Cpcpapgpapap(5cm) Paptpcpaptpgptptp(5cm)Ptpg)-3');
Chain: C
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Unp Residues 411-500
Synonym: Gr,Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppphis4;
Expression_system_taxid: 1182038

Molecule: Dna (5'-D(Cpcpapgpapap(5cm) Paptpgpaptpgptptp(5cm)Ptpg)-3');
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.942 99.643 112.229 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 5CM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5emc.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5EMC
  • CSU: Contacts of Structural Units for 5EMC
  • Structure Factors (327 Kb)
  • Retrieve 5EMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EMC from S2C, [Save to disk]
  • Re-refined 5emc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EMC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5emc_B] [5emc_C] [5emc] [5emc_D] [5emc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EMC: [ZnF_C4 ] by SMART
    • Other resources with information on 5EMC
  • Community annotation for 5EMC at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science