5EME Rna date Nov 06, 2015
title Complex Of Rna R(Gcagcagc) With Antisense Pna P(Ctgctgc)
authors A.Kiliszek, K.Banaszak, Z.Dauter, W.Rypniewski
compound source
Molecule: Rna (5'-R(Gpcpapgpcpapgpc)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Antisense Pna Strand
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.139 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.171 35.171 68.918 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.15 Å
ligand CL, CPN, GPN, TPN enzyme
Primary referenceThe first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs., Kiliszek A, Banaszak K, Dauter Z, Rypniewski W, Nucleic Acids Res. 2015 Dec 29. pii: gkv1513. PMID:26717983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (5eme.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 5EME
  • CSU: Contacts of Structural Units for 5EME
  • Structure Factors (158 Kb)
  • Retrieve 5EME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EME from S2C, [Save to disk]
  • Re-refined 5eme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EME
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eme_A] [5eme_B] [5eme]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5EME
  • Community annotation for 5EME at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science