5EMP Transcription Dna date Nov 06, 2015
title Transcription Factor Grdbd And Mmgre Complex
authors T.Lian, J.Jin, X.Su
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Unp Residues 411-500
Synonym: Gr,Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppphis4;
Expression_system_taxid: 1182038

Molecule: Dna (5'- D(Cpcpapgpapapcpaptpgpaptpgptptpcptpg)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpcpapgpapapcpaptp(5cm) Paptpgptptpcptpg)-3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.279 100.492 112.043 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 5CM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5emp.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5EMP
  • CSU: Contacts of Structural Units for 5EMP
  • Structure Factors (339 Kb)
  • Retrieve 5EMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EMP from S2C, [Save to disk]
  • Re-refined 5emp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5emp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5emp_B] [5emp] [5emp_D] [5emp_C] [5emp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EMP: [ZnF_C4 ] by SMART
  • Other resources with information on 5EMP
  • Community annotation for 5EMP at PDBWiki (http://pdbwiki.org)

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