5EMV Transcription date Nov 06, 2015
title Crystal Structure Of The Palmitoylated Human Tead2 Transcrip Factor
authors C.L.Noland, S.Gierke, P.D.Schnier, J.Murray, W.N.Sandoval, M.Sago A.Dey, R.N.Hannoush, W.J.Fairbrother, C.N.Cunningham
compound source
Molecule: Transcriptional Enhancer Factor Tef-4
Chain: A, B
Fragment: Yap Binding Domain, Unp Residues 219-435
Synonym: Tea Domain Family Member 2,Tead-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead2, Tef4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: I 1 2 1
R_factor 0.202 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.830 61.250 112.672 90.00 101.89 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand P1L enzyme
Primary referencePalmitoylation of TEAD Transcription Factors Is Required for Their Stability and Function in Hippo Pathway Signaling., Noland CL, Gierke S, Schnier PD, Murray J, Sandoval WN, Sagolla M, Dey A, Hannoush RN, Fairbrother WJ, Cunningham CN, Structure. 2016 Jan 5;24(1):179-86. doi: 10.1016/j.str.2015.11.005. Epub 2015 Dec, 24. PMID:26724994
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (5emv.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (5emv.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5EMV
  • CSU: Contacts of Structural Units for 5EMV
  • Structure Factors (777 Kb)
  • Retrieve 5EMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EMV from S2C, [Save to disk]
  • Re-refined 5emv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5emv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5emv_A] [5emv] [5emv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EMV
  • Community annotation for 5EMV at PDBWiki (http://pdbwiki.org)

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