5EN4 Oxidoreductase date Nov 09, 2015
title Complex Of 17-Beta-Hydroxysteroid Dehydrogenase Type 14 With Inhibitor.
authors N.Bertoletti, F.Braun, S.Marchais-Oberwinkler, A.Heine, G.Klebe
compound source
Molecule: 17-Beta-Hydroxysteroid Dehydrogenase 14
Chain: A
Synonym: 17-Beta-Hsd 14,17-Beta-Hydroxysteroid Dehydrogenas Dehydrogenasereductase Sdr Family Member 10,Retinal Short- Dehydrogenasereductase Retsdr3,Short Chain Dehydrogenaser Family 47c Member 1;
Ec: 1.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd17b14, Dhrs10, Sdr3, Sdr47c1, Unq502pro474
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Plyss
symmetry Space Group: I 4 2 2
R_factor 0.108 R_Free 0.129
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.724 91.724 135.022 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.52 Å
ligand 5Q6, NA, NAD enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFirst Structure-Activity Relationship of 17beta-Hydroxysteroid Dehydrogenase Type 14 Nonsteroidal Inhibitors and Crystal Structures in Complex with the Enzyme., Braun F, Bertoletti N, Moller G, Adamski J, Steinmetzer T, Salah M, Abdelsamie AS, van Koppen CJ, Heine A, Klebe G, Marchais-Oberwinkler S, J Med Chem. 2016 Dec 8;59(23):10719-10737. Epub 2016 Nov 18. PMID:27933965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (5en4.pdb1.gz) 468 Kb
  • LPC: Ligand-Protein Contacts for 5EN4
  • CSU: Contacts of Structural Units for 5EN4
  • Structure Factors (402 Kb)
  • Retrieve 5EN4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EN4 from S2C, [Save to disk]
  • Re-refined 5en4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EN4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EN4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5en4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5en4_A] [5en4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EN4
  • Community annotation for 5EN4 at PDBWiki (http://pdbwiki.org)

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