5ENB Signaling Protein date Nov 09, 2015
title Crystal Structure Of The Second Bromodomain Of Pleckstrin Ho Domain Interacting Protein (Phip) In Complex With O-Tolylth (Sgc - Diamond I04-1 Fragment Screening)
authors T.Krojer, R.Talon, P.Collins, A.Bradley, O.Cox, A.Szykowska, N.Bur Brown, P.Brennan, C.Bountra, C.H.Arrowsmith, A.Edwards, F.Von De Structural Genomics Consortium (Sgc)
compound source
Molecule: Ph-Interacting Protein
Chain: A
Fragment: Bromodomain
Synonym: Phip,Irs-1 Ph Domain-Binding Protein,Wd Repeat-Con Protein 11;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phip, Wdr11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 2
R_factor 0.212 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.300 92.170 24.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand 5Q5, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA poised fragment library enables rapid synthetic expansion yielding the first reported inhibitors of PHIP(2), an atypical bromodomain., Cox OB, Krojer T, Collins P, Monteiro O, Talon R, Bradley A, Fedorov O, Amin J, Marsden BD, Spencer J, von Delft F, Brennan PE, Chem Sci. 2016 Mar 1;7(3):2322-2330. doi: 10.1039/c5sc03115j. Epub 2015 Dec 22. PMID:29910922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5enb.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5ENB
  • CSU: Contacts of Structural Units for 5ENB
  • Structure Factors (142 Kb)
  • Retrieve 5ENB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ENB from S2C, [Save to disk]
  • Re-refined 5enb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ENB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ENB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5enb_A] [5enb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5ENB: [BROMO ] by SMART
    • Other resources with information on 5ENB
  • Community annotation for 5ENB at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science