5EP6 Protein Binding Transferase date Nov 11, 2015
title The Crystal Structure Of Nap1 In Complex With Tbk1
authors F.Li, X.Xie, J.Liu, L.Pan
compound source
Molecule: 5-Azacytidine-Induced Protein 2
Chain: A, C
Fragment: Unp Residues 215-255
Synonym: Nf-Kappa-B-Activating Kinase-Associated Protein 1, Associated Protein 1,Tilp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Azi2, Nap1, Tbkbp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Serinethreonine-Protein Kinase Tbk1
Chain: B, D
Fragment: Unp Residues 677-729
Synonym: Nf-Kappa-B-Activating Kinase,T2k,Tank-Binding Kina
Ec: 2.7.11.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbk1, Nak
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.360 50.113 84.416 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand GOL enzyme Transferase E.C.2.7.11.1 BRENDA
Primary referenceStructural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins., Li F, Xie X, Wang Y, Liu J, Cheng X, Guo Y, Gong Y, Hu S, Pan L, Nat Commun. 2016 Sep 13;7:12708. doi: 10.1038/ncomms12708. PMID:27620379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5ep6.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (5ep6.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 5EP6
  • CSU: Contacts of Structural Units for 5EP6
  • Structure Factors (540 Kb)
  • Retrieve 5EP6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EP6 from S2C, [Save to disk]
  • Re-refined 5ep6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EP6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EP6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ep6] [5ep6_C] [5ep6_D] [5ep6_A] [5ep6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EP6
  • Community annotation for 5EP6 at PDBWiki (http://pdbwiki.org)

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