5EPG Oxidoreductase date Nov 11, 2015
title Human Aldehyde Oxidase Snp S1271l
authors C.Coelho, M.J.Romao, T.Santos-Silva
compound source
Molecule: Aldehyde Oxidase
Chain: A
Synonym: Aldehyde Oxidase 1,Azaheterocycle Hydroxylase
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aox1, Ao
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.162 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
147.439 147.439 131.713 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.39 Å
ligand FAD, FES, MOS, MTE enzyme Oxidoreductase E.C. BRENDA
  • electron transfer activity

  • Primary referenceOptimization of the expression of Human Aldehyde Oxidase for Investigations of Single Nucleotide Polymorphisms., Foti A, Hartmann T, Coelho C, Santos-Silva T, Romao MJ, Leimkuhler S, Drug Metab Dispos. 2016 Feb 3. pii: dmd.115.068395. PMID:26842593
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (5epg.pdb1.gz) 409 Kb
  • LPC: Ligand-Protein Contacts for 5EPG
  • CSU: Contacts of Structural Units for 5EPG
  • Structure Factors (427 Kb)
  • Retrieve 5EPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EPG from S2C, [Save to disk]
  • Re-refined 5epg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EPG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5epg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5epg] [5epg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5EPG: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 5EPG
  • Community annotation for 5EPG at PDBWiki (http://pdbwiki.org)

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