5EPJ Transcription Transcription Inhibitor date Nov 11, 2015
title Crystal Structure Of Chromodomain Of Cbx7 In Complex With In Unc3866
authors Y.Liu, W.Tempel, J.R.Walker, J.I.Stuckey, B.M.Dickson, L.I.James, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genom Consortium (Sgc)
compound source
Molecule: Chromobox Protein Homolog 7
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbx7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl

Molecule: Peptide-Like Inhibitor Unc3866
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.237 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.286 40.286 82.092 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 5R0, 5R5, ELY, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (5epj.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 5EPJ
  • CSU: Contacts of Structural Units for 5EPJ
  • Structure Factors (1924 Kb)
  • Retrieve 5EPJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EPJ from S2C, [Save to disk]
  • Re-refined 5epj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EPJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EPJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5epj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5epj_B] [5epj] [5epj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EPJ: [CHROMO ] by SMART
  • Other resources with information on 5EPJ
  • Community annotation for 5EPJ at PDBWiki (http://pdbwiki.org)

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