OCA Atlas for 5ES4

5ES4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, CA, MAN, MG, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, G, E		heterotypic cell-cell adhesi...
H, F, B, D

Primary reference

Leukocyte integrin alphaLbeta2 headpiece structures: The alphaI domain, the pocket for the internal ligand, and concerted movements of its loops., Sen M, Springer TA, Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):2940-5. doi:, 10.1073/pnas.1601379113. Epub 2016 Mar 2. PMID:26936951

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2200 Kb) [Save to disk]

Biological Unit Coordinates (5es4.pdb1.gz) 602 Kb

Biological Unit Coordinates (5es4.pdb2.gz) 543 Kb

Biological Unit Coordinates (5es4.pdb3.gz) 541 Kb

Biological Unit Coordinates (5es4.pdb4.gz) 537 Kb

LPC: Ligand-Protein Contacts for 5ES4

CSU: Contacts of Structural Units for 5ES4

Structure Factors (3102 Kb)

Retrieve 5ES4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5ES4 from S2C, [Save to disk]

Re-refined 5es4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ES4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5es4] [5es4_A] [5es4_B] [5es4_C] [5es4_D] [5es4_E] [5es4_F] [5es4_G] [5es4_H]

SWISS-PROT database:

Domains found in 5ES4: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART

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