5ESV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG, ZN enzyme
Gene HI
Gene
Ontology
ChainFunctionProcessComponent
E, F, G


Primary referenceStructures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design., Gorman J, Soto C, Yang MM, Davenport TM, Guttman M, Bailer RT, Chambers M, Chuang GY, DeKosky BJ, Doria-Rose NA, Druz A, Ernandes MJ, Georgiev IS, Jarosinski MC, Joyce MG, Lemmin TM, Leung S, Louder MK, McDaniel JR, Narpala S, Pancera M, Stuckey J, Wu X, Yang Y, Zhang B, Zhou T, Program NC, Mullikin JC, Baxa U, Georgiou G, McDermott AB, Bonsignori M, Haynes BF, Moore PL, Morris L, Lee KK, Shapiro L, Mascola JR, Kwong PD, Nat Struct Mol Biol. 2016 Jan;23(1):81-90. doi: 10.1038/nsmb.3144. Epub 2015 Dec , 21. PMID:26689967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (912 Kb) [Save to disk]
  • Biological Unit Coordinates (5esv.pdb1.gz) 893 Kb
  • LPC: Ligand-Protein Contacts for 5ESV
  • CSU: Contacts of Structural Units for 5ESV
  • Structure Factors (857 Kb)
  • Retrieve 5ESV in mmCIF format [Save to disk]
  • Re-refined 5esv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ESV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5esv_A] [5esv_B] [5esv] [5esv_D] [5esv_C] [5esv_E] [5esv_F] [5esv_G] [5esv_H] [5esv_L]
  • SWISS-PROT database:
  • Domains found in 5ESV: [IG_like] [IGv ] by SMART

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