5ETE Sterol Binding Protein date Nov 17, 2015
title Structure Of Pathogen-Related Yeast Protein, Pry1 In Complex Competitive Inhibitor Of Cholesterol Binding
authors O.A.Asojo
compound source
Molecule: Pry1p
Chain: A
Fragment: Residues 158-306
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae Yjm1434
Organism_taxid: 1294371
Gene: Pry1, H819_yjm1434j00135
Expression_system: Pichia
Expression_system_taxid: 4919
symmetry Space Group: P 62 2 2
R_factor 0.167 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.740 124.740 59.060 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand DIO enzyme
Gene H819
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional characterization of the CAP domain of pathogen-related yeast 1 (Pry1) protein., Darwiche R, Kelleher A, Hudspeth EM, Schneiter R, Asojo OA, Sci Rep. 2016 Jun 27;6:28838. doi: 10.1038/srep28838. PMID:27344972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5ete.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5ETE
  • CSU: Contacts of Structural Units for 5ETE
  • Structure Factors (352 Kb)
  • Retrieve 5ETE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ETE from S2C, [Save to disk]
  • Re-refined 5ete structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ETE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ETE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ete from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ete] [5ete_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5ETE: [SCP ] by SMART
  • Other resources with information on 5ETE
  • Community annotation for 5ETE at PDBWiki (http://pdbwiki.org)

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