5ETF Transferase date Nov 17, 2015
title Structure Of Dead Kinase Mapk14 With Bound The Kim Domain Of
authors E.Pellegrini, A.Palencia, L.Braun, U.Kapp, A.Bougdour, H.Belrhali M.W.Bowler, M.Hakimi
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mapk 14,Cytokine Suppressive Anti-Inflammatory Dru Protein,Csbp,Map Kinase Mxi2,Max-Interacting Protein 2,Mito Activated Protein Kinase P38 Alpha,Map Kinase P38 Alpha,Str Activated Protein Kinase 2a,Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2, Sapk2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: B
Fragment: Unp Residues 4-18
Synonym: Mapkk 6,Mapkerk Kinase 6,Mek 6,Stress-Activated P Kinase Kinase 3,Sapkk3;
Ec: 2.7.12.2
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.163 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.383 82.383 123.335 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for the Subversion of MAP Kinase Signaling by an Intrinsically Disordered Parasite Secreted Agonist., Pellegrini E, Palencia A, Braun L, Kapp U, Bougdour A, Belrhali H, Bowler MW, Hakimi MA, Structure. 2016 Nov 14. pii: S0969-2126(16)30338-0. doi:, 10.1016/j.str.2016.10.011. PMID:27889209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5etf.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 5ETF
  • Structure Factors (1135 Kb)
  • Retrieve 5ETF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ETF from S2C, [Save to disk]
  • Re-refined 5etf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ETF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ETF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5etf] [5etf_B] [5etf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5ETF: [S_TKc ] by SMART
  • Other resources with information on 5ETF
  • Community annotation for 5ETF at PDBWiki (http://pdbwiki.org)

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