5EU8 Hydrolase Hydrolase Inhibitor date Nov 18, 2015
title Structure Of Fipv Main Protease In Complex With Dual Inhibit
authors F.Wang, C.Chen, X.Liu, K.Yang, X.Xu, H.Yang
compound source
Molecule: Main Protease
Chain: A
Engineered: Yes
Organism_scientific: Feline Infectious Peritonitis Virus
Organism_common: Fipv
Organism_taxid: 11135
Gene: 1b, Orf1a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: N-[(5-Methylisoxazol-3-Yl)Carbonyl]Alanyl-L-Valyl ((1r,2z)-4-(Benzyloxy)-4-Oxo-1-{[(3r)-2-Oxopyrrolidin-3- Yl]Methyl}But-2-Enyl)-L-Leucinamide;
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 4 2 2
R_factor 0.212 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.261 112.261 102.102 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand 010, 02J, EDO, PJE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of feline infectious peritonitis virus main protease in complex with synergetic dual inhibitors., Wang F, Chen C, Liu X, Yang K, Xu X, Yang H, J Virol. 2015 Dec 9. pii: JVI.02685-15. PMID:26656689
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (5eu8.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 5EU8
  • CSU: Contacts of Structural Units for 5EU8
  • Structure Factors (367 Kb)
  • Retrieve 5EU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EU8 from S2C, [Save to disk]
  • Re-refined 5eu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EU8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eu8_B] [5eu8] [5eu8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EU8
  • Community annotation for 5EU8 at PDBWiki (http://pdbwiki.org)

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