5EUD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5S6, LLP, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceCreation of a S1P Lyase bacterial surrogate for structure-based drug design., Argiriadi MA, Banach D, Radziejewska E, Marchie S, DiMauro J, Dinges J, Dominguez E, Hutchins C, Judge RA, Queeney K, Wallace G, Harris CM, Bioorg Med Chem Lett. 2016 May 1;26(9):2293-6. doi: 10.1016/j.bmcl.2016.02.084., Epub 2016 Mar 3. PMID:27013389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (5eud.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 5EUD
  • CSU: Contacts of Structural Units for 5EUD
  • Structure Factors (1233 Kb)
  • Retrieve 5EUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EUD from S2C, [Save to disk]
  • Re-refined 5eud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eud_A] [5eud_B] [5eud]
  • SWISS-PROT database:

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