5EV1	Rna Binding Protein Rna	date	Nov 19, 2015
title	Structure I Of Intact U2af65 Recognizing A 3' Splice Site Si
authors	A.A.Agrawal, J.L.Jenkins, C.L.Kielkopf
compound		source
Molecule: Splicing Factor U2af 65 Kda Subunit Chain: A Fragment: Unp Residues 141-341 Synonym: U2 Auxiliary Factor 65 Kda Subunit,Hu2af65,U2 Snrn Auxiliary Factor Large Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: U2af2, U2af65 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
Molecule: Dnarna (5'-R(Upupu)-D(Pupup(Bru)Pu)-R(Pu Chain: B Engineered: Yes Other_details: The 3' U Is Disordered In This 9mer		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 2 2 21	R_factor 0.173 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.052 114.241 59.418 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.04 Å
ligand	BRU, NA, PEG, PGE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal., Agrawal AA, Salsi E, Chatrikhi R, Henderson S, Jenkins JL, Green MR, Ermolenko DN, Kielkopf CL, Nat Commun. 2016 Mar 8;7:10950. doi: 10.1038/ncomms10950. PMID:26952537

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (5ev1.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 5EV1 CSU: Contacts of Structural Units for 5EV1 Structure Factors (172 Kb) Retrieve 5EV1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EV1 from S2C, [Save to disk] Re-refined 5ev1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EV1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EV1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ev1_A] [5ev1_B] [5ev1] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EV1: [RRM ] by SMART

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