5EW6 Sugar Binding Protein date Nov 20, 2015
title Structure Of Ligand Binding Region Of Uparap At Ph 7.4 Witho
authors C.Yuan, M.Huang
compound source
Molecule: C-Type Mannose Receptor 2
Chain: A
Fragment: Ligand Binding Region, Unp Residues 31-510
Synonym: Uparap
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mrc2, Clec13e, Endo180, Kiaa0709, Uparap
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2 Cells
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pmtbip
symmetry Space Group: P 41 21 2
R_factor 0.197 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.110 78.110 252.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.29 Å
ligand 1PE, NA, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (5ew6.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 5EW6
  • CSU: Contacts of Structural Units for 5EW6
  • Structure Factors (755 Kb)
  • Retrieve 5EW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EW6 from S2C, [Save to disk]
  • Re-refined 5ew6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EW6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ew6_A] [5ew6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5EW6: [CLECT] [FN2] [RICIN ] by SMART
    • Other resources with information on 5EW6
  • Community annotation for 5EW6 at PDBWiki (http://pdbwiki.org)

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