5EWZ Signaling Protein date Nov 23, 2015
title Small-Molecule Stabilization Of The 14-3-3gab2 Ppi Interfac
authors D.Bier, C.Ottmann
compound source
Molecule: 14-3-3 Protein Zetadelta
Chain: A, B
Synonym: Protein Kinase C Inhibitor Protein 1,Kcip-1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhaz
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Grb2-Associated-Binding Protein 2
Chain: C
Synonym: Grb2-Associated Binder 2,Growth Factor Receptor Bo Protein 2-Associated Protein 2,Pp100;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Grb2-Associated-Binding Protein 2
Chain: D
Synonym: Grb2-Associated Binder 2,Growth Factor Receptor Bo Protein 2-Associated Protein 2,Pp100;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.660 104.920 116.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand BEZ, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • positive regulation of prote...

    • Primary referenceSmall-Molecule Stabilization of the 14-3-3/Gab2 Protein-Protein Interaction (PPI) Interface., Bier D, Bartel M, Sies K, Halbach S, Higuchi Y, Haranosono Y, Brummer T, Kato N, Ottmann C, ChemMedChem. 2016 Apr 19;11(8):911-8. doi: 10.1002/cmdc.201500484. Epub 2015 Dec , 8. PMID:26644359
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5ewz.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 5EWZ
  • CSU: Contacts of Structural Units for 5EWZ
  • Structure Factors (810 Kb)
  • Retrieve 5EWZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EWZ from S2C, [Save to disk]
  • Re-refined 5ewz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EWZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EWZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ewz_C] [5ewz_B] [5ewz_D] [5ewz_A] [5ewz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EWZ: [14_3_3 ] by SMART
    • Other resources with information on 5EWZ
  • Community annotation for 5EWZ at PDBWiki (http://pdbwiki.org)

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