5EXH	Oxidoreductase Dna	date	Nov 23, 2015
title	Crystal Structure Of Mtet3-Cxxc Domain In Complex With 5- Carboxylcytosine Dna At 1.3 Angstroms Resolution.
authors	J.Song
compound		source
Molecule: Dna (5'-D(Gpapaptpcp(1cc)Pgpgpaptptpc Chain: A, B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Methylcytosine Dioxygenase Tet3 Chain: C Fragment: Cxxc Domain (Unp Residues 51-96) Synonym: Tet3 Isoform 1,Tet Methylcytosine Deoxygenase 3 Is Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Tet3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.168 R_Free 0.187
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.959 27.230 47.060 90.00 104.44 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	1CC, ZN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Gene Ontology	Chain Function Process Component C
Primary reference	Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration., Jin SG, Zhang ZM, Dunwell TL, Harter MR, Wu X, Johnson J, Li Z, Liu J, Szabo PE, Lu Q, Xu GL, Song J, Pfeifer GP, Cell Rep. 2016 Jan 26;14(3):493-505. doi: 10.1016/j.celrep.2015.12.044. Epub 2016, Jan 7. PMID:26774490

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (5exh.pdb1.gz) 22 Kb LPC: Ligand-Protein Contacts for 5EXH CSU: Contacts of Structural Units for 5EXH Structure Factors (379 Kb) Retrieve 5EXH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EXH from S2C, [Save to disk] Re-refined 5exh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5EXH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5exh_B] [5exh_C] [5exh] [5exh_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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