5EYA	Signaling Protein Transferase	date	Nov 24, 2015
title	Trim25 Ring Domain In Complex With Ubc13-Ub Conjugate
authors	O.Pornillos, J.G.Sanchez
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 N Chain: A, B Synonym: Bendless-Like Ubiquitin-Conjugating Enzyme,E2 Ubiq Conjugating Enzyme N,Ubc13,Ubch13,Ubiquitin Carrier Protein Ubiquitin-Protein Ligase N; Ec: 2.3.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2n, Blu Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Tripartite Motif-Containing 25 Variant Chain: F, G Fragment: Unp Residues 12-97 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Polyubiquitin-B Chain: C, D Fragment: Unp Residues 1-76 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.047 75.779 169.101 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ZN	enzyme	Transferase E.C.2.3.2.23 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanism of TRIM25 Catalytic Activation in the Antiviral RIG-I Pathway., Sanchez JG, Chiang JJ, Sparrer KM, Alam SL, Chi M, Roganowicz MD, Sankaran B, Gack MU, Pornillos O, Cell Rep. 2016 Aug 2;16(5):1315-25. doi: 10.1016/j.celrep.2016.06.070. Epub 2016 , Jul 14. PMID:27425606

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk] Biological Unit Coordinates (5eya.pdb1.gz) 302 Kb LPC: Ligand-Protein Contacts for 5EYA CSU: Contacts of Structural Units for 5EYA Structure Factors (270 Kb) Retrieve 5EYA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EYA from S2C, [Save to disk] Re-refined 5eya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EYA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EYA

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eya] [5eya_C] [5eya_A] [5eya_F] [5eya_G] [5eya_D] [5eya_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5EYA: [RING] [UBCc] [UBQ ] by SMART

Other resources with information on 5EYA

Community annotation for 5EYA at PDBWiki (http://pdbwiki.org)

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