5EYB Dna Binding Protein Dna date Nov 24, 2015
title X-Ray Structure Of Reb1-Ter Complex
authors R.Jaiswal, M.Choudhury, S.Zaman, S.Singh, V.Santosh, D.Bastia, C.R.Escalante
compound source
Molecule: Dna-Binding Protein Reb1
Chain: A, B
Fragment: Unp Residues 146-504
Engineered: Yes
 Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 284812
Strain: 972 Atcc 24843
Gene: Reb1, Spbc1198.11c, Spbc660.01c
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss

Molecule: Dna (26-Mer)
Chain: C, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (26-Mer)
Chain: D, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.959 162.911 71.086 90.00 94.66 90.00
method X-Ray Diffractionresolution 2.70 Å
Primary referenceFunctional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe., Jaiswal R, Choudhury M, Zaman S, Singh S, Santosh V, Bastia D, Escalante CR, Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):E2267-76. doi:, 10.1073/pnas.1525465113. Epub 2016 Mar 28. PMID:27035982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (5eyb.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (5eyb.pdb2.gz) 159 Kb
  • CSU: Contacts of Structural Units for 5EYB
  • Structure Factors (724 Kb)
  • Retrieve 5EYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EYB from S2C, [Save to disk]
  • Re-refined 5eyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EYB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eyb_B] [5eyb_C] [5eyb_D] [5eyb_A] [5eyb_F] [5eyb] [5eyb_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EYB: [SANT ] by SMART
    • Other resources with information on 5EYB
  • Community annotation for 5EYB at PDBWiki (http://pdbwiki.org)

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