5EYI Hydrolase date Nov 25, 2015
title Structure Of Prrsv Apo-Nsp11 At 2.16a
authors M.F.Zhang, Z.Chen
compound source
Molecule: Non-Structural Protein 11
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Prrsv 16244b
Organism_common: Porcine Reproductive And Respiratory Syndr 16244b;
Organism_taxid: 300561
Strain: 16244b
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.184 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.299 75.299 199.489 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand CL, PG0, SO4 enzyme
Primary referenceStructural biology of the arterivirus nsp11 endoribonucleases., Zhang M, Li X, Deng Z, Chen Z, Liu Y, Gao Y, Wu W, Chen Z, J Virol. 2016 Oct 19. pii: JVI.01309-16. PMID:27795409
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5eyi.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5EYI
  • CSU: Contacts of Structural Units for 5EYI
  • Structure Factors (242 Kb)
  • Retrieve 5EYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EYI from S2C, [Save to disk]
  • Re-refined 5eyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EYI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eyi_B] [5eyi] [5eyi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EYI
  • Community annotation for 5EYI at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science