5EZV Transferase date Nov 26, 2015
title X-Ray Crystal Structure Of Amp-Activated Protein Kinase Alph Rim Chimaera (Alpha-2(1-347)Alpha-1(349-401)Alpha-2(397 Beta-1 Gamma-1) Co-Crystallized With C2 (5-(5-Hydroxyl-Isox Yl)-Furan-2-Phosphonic Acid)
authors C.G.Langendorf, B.E.Kemp
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit 2alpha-1 Rim Swap Chimera;
Chain: A, C
Synonym: Ampk Subunit Alpha-2,Acetyl-Coa Carboxylase Kinase Kinase,Hydroxymethylglutaryl-Coa Reductase Kinase,Hmgcr Kin Subunit Alpha-1,Acetyl-Coa Carboxylase Kinase,Acaca Kinase, Hydroxymethylglutaryl-Coa Reductase Kinase,Hmgcr Kinase,Tau Kinase Prkaa1;
Ec: 2.7.11.1,2.7.11.27,2.7.11.31
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkaa2, Ampk, Ampk2, Prkaa1, Ampk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1

Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-1
Chain: B, D
Synonym: Ampkb
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkab1, Ampk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcola

Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1
Chain: E, F
Synonym: Ampkg
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkag1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.608 134.112 141.287 90.00 93.16 90.00
method X-Ray Diffractionresolution 2.99 Å
ligand C1V, C2Z, SEP, STU, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


F, E
  • cAMP-dependent protein kinas...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (617 Kb) [Save to disk]
  • Biological Unit Coordinates (5ezv.pdb1.gz) 306 Kb
  • Biological Unit Coordinates (5ezv.pdb2.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 5EZV
  • CSU: Contacts of Structural Units for 5EZV
  • Structure Factors (3836 Kb)
  • Retrieve 5EZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EZV from S2C, [Save to disk]
  • Re-refined 5ezv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ezv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ezv] [5ezv_C] [5ezv_E] [5ezv_A] [5ezv_F] [5ezv_D] [5ezv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5EZV: [AMPKBI] [CBS] [S_TKc ] by SMART
  • Other resources with information on 5EZV
  • Community annotation for 5EZV at PDBWiki (http://pdbwiki.org)

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