5EZZ Hydrolase Inhibitor date Nov 27, 2015
title Crystal Structure Of Bace-1 In Complex With (4s)-4-[3-(5-Chl Pyridyl)Phenyl]-4-[4-(Difluoromethoxy)-3-Methyl-Phenyl]-5h- Amine
authors D.Banner, J.Benz, M.Stihle, A.Kuglstatter
compound source
Molecule: Beta-Secretase 1
Chain: A
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.205 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.670 102.670 170.120 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand 5T6, DMS, NA enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Real-World Perspective on Molecular Design., Kuhn B, Guba W, Hert J, Banner D, Bissantz C, Ceccarelli S, Haap W, Korner M, Kuglstatter A, Lerner C, Mattei P, Neidhart W, Pinard E, Rudolph MG, Schulz-Gasch T, Woltering T, Stahl M, J Med Chem. 2016 Feb 24. PMID:26878596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5ezz.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5EZZ
  • CSU: Contacts of Structural Units for 5EZZ
  • Structure Factors (997 Kb)
  • Retrieve 5EZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EZZ from S2C, [Save to disk]
  • Re-refined 5ezz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EZZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ezz] [5ezz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EZZ
  • Community annotation for 5EZZ at PDBWiki (http://pdbwiki.org)

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