5F1R Dna Binding Protein date Nov 30, 2015
title The Transcriptional Regulator Prfa From Listeria Monocytogen Complex With A Ring-Fused 2-Pyridone (C10)
authors A.Begum, C.Grundstrom, J.A.D.Good, C.Andersson, F.Almqvist, J.Joh U.H.Sauer, A.E.Sauer-Eriksson
compound source
Molecule: Listeriolysin Regulatory Protein
Chain: A, B
Synonym: Transcription Regulatory Protein Prfa
Engineered: Yes
 Organism_scientific: Listeria Monocytogenes Serovar 12a (S Atcc Baa-679 Egd-E);
Organism_taxid: 169963
Gene: Prfa, Lmo0200
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.340 80.970 62.340 90.00 112.54 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand 42O enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAttenuating Listeria monocytogenes Virulence by Targeting the Regulatory Protein PrfA., Good JA, Andersson C, Hansen S, Wall J, Krishnan KS, Begum A, Grundstrom C, Niemiec MS, Vaitkevicius K, Chorell E, Wittung-Stafshede P, Sauer UH, Sauer-Eriksson AE, Almqvist F, Johansson J, Cell Chem Biol. 2016 Mar 17;23(3):404-14. doi: 10.1016/j.chembiol.2016.02.013. PMID:26991105
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (5f1r.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 5F1R
  • CSU: Contacts of Structural Units for 5F1R
  • Structure Factors (205 Kb)
  • Retrieve 5F1R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F1R from S2C, [Save to disk]
  • Re-refined 5f1r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F1R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5F1R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f1r] [5f1r_B] [5f1r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5F1R
  • Community annotation for 5F1R at PDBWiki (http://pdbwiki.org)

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