5F4Y Protein Binding date Dec 03, 2015
title Structure Of The Sd2 Domain Of Human Shroom2
authors J.H.Mo, J.K.Zalewski, A.Heroux, A.P.Vandemark
compound source
Molecule: Protein Shroom2
Chain: A, B
Fragment: Asd2 Domain Residues 1427-1610
Synonym: Apical-Like Protein,Protein Apxl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shroom2, Apxl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Ripl
symmetry Space Group: C 2 2 21
R_factor 0.247 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.887 110.000 118.862 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.29 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the Shroom-Rho kinase complex reveals a binding interface with monomeric Shroom that regulates cell morphology and stimulates kinase activity., Zalewski JK, Mo JH, Heber S, Heroux A, Gardner RG, Hildebrand JD, VanDemark AP, J Biol Chem. 2016 Oct 10. pii: jbc.M116.738559. PMID:27758857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5f4y.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 5F4Y
  • Structure Factors (73 Kb)
  • Retrieve 5F4Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F4Y from S2C, [Save to disk]
  • Re-refined 5f4y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F4Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F4Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f4y_A] [5f4y] [5f4y_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5F4Y
  • Community annotation for 5F4Y at PDBWiki (http://pdbwiki.org)

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