5F59 Transferase date Dec 04, 2015
title The Crystal Structure Of Mll3 Set Domain
authors Y.Li, M.Lei, Y.Chen
compound source
Molecule: Histone-Lysine N-Methyltransferase 2c
Chain: A
Fragment: Mll3 Set Domain (Unp Residues 4757-4910)
Synonym: Lysine N-Methyltransferase 2c,Homologous To Alr Pr Myeloidlymphoid Or Mixed-Lineage Leukemia Protein 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2c, Halr, Kiaa1506, Mll3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b-Sumo
symmetry Space Group: P 41 3 2
R_factor 0.180 R_Free 0.229
length a length b length c angle alpha angle beta angle gamma
129.056 129.056 129.056 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand SAH, ZN enzyme Transferase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5f59.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 5F59
  • CSU: Contacts of Structural Units for 5F59
  • Structure Factors (115 Kb)
  • Retrieve 5F59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F59 from S2C, [Save to disk]
  • Re-refined 5f59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F59
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5f59 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f59_A] [5f59]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5F59: [PostSET] [SET ] by SMART
  • Other resources with information on 5F59
  • Community annotation for 5F59 at PDBWiki (http://pdbwiki.org)

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