5F5S Splicing date Dec 04, 2015
title Crystal Structure Of The Prp38-Mfap1 Complex Of Homo Sapiens
authors A.K.C.Ulrich, M.C.Wahl
compound source
Molecule: Pre-Mrna-Splicing Factor 38a
Chain: A
Fragment: Ntr
Synonym: Prp38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prpf38a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11

Molecule: Microfibrillar-Associated Protein 1
Chain: B
Fragment: Unp Residues 267-344
Synonym: Mfap1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mfap1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 61 2 2
R_factor 0.221 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.790 66.790 242.540 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
Primary referenceScaffolding in the Spliceosome via Single alpha Helices., Ulrich AKC, Seeger M, Schutze T, Bartlick N, Wahl MC, Structure. 2016 Nov 1;24(11):1972-1983. doi: 10.1016/j.str.2016.09.007. Epub 2016, Oct 20. PMID:27773687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5f5s.pdb1.gz) 82 Kb
  • CSU: Contacts of Structural Units for 5F5S
  • Structure Factors (285 Kb)
  • Retrieve 5F5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F5S from S2C, [Save to disk]
  • Re-refined 5f5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F5S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f5s_A] [5f5s] [5f5s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5F5S
  • Community annotation for 5F5S at PDBWiki (http://pdbwiki.org)

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